Developmental and gene expression analyses of a cotton naked seed mutant

J. Lee, Jinsuk; S. S. Hassan, Osama; Gao, Wenxilang; E. Wei, Ning; J. Kohel, Russell; Chen, Xiao-Ya; Payton, Paxton; Sze, Sing-Hoi; M. Stelly, David; Chen, Z. Jeffrey

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dc.contributor.author	J. Lee, Jinsuk
dc.contributor.author	S. S. Hassan, Osama
dc.contributor.author	Gao, Wenxilang
dc.contributor.author	E. Wei, Ning
dc.contributor.author	J. Kohel, Russell
dc.contributor.author	Chen, Xiao-Ya
dc.contributor.author	Payton, Paxton
dc.contributor.author	Sze, Sing-Hoi
dc.contributor.author	M. Stelly, David
dc.contributor.author	Chen, Z. Jeffrey
dc.date.accessioned	2020-01-19T07:15:15Z
dc.date.available	2020-01-19T07:15:15Z
dc.date.issued	2006
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dc.identifier.other	https://doi.org/10.1007/s00425-005-0098-7
dc.identifier.uri	https://link.springer.com/content/pdf/10.1007/s00425-005-0098-7.pdf
dc.description	MSA Google Scholar	en_US
dc.description.abstract	Cotton fiber development is a fundamental biological phenomenon, yet the molecular basis of fiber cell initiation is poorly understood. We examined molecular and cellular events of fiber cell development in the naked seed mutant (N1N1) and its isogenic line of cotton (Gossypium hirsutum L. cv. Texas Marker-1, TM-1). The dominant mutation not only delayed the process of fiber cell formation and elongation but also reduced the total number of fiber cells, resulting in sparsely distributed short fibers. Gene expression changes in TM-1 and N1N1 mutant lines among four tissues were analyzed using spotted cotton oligo-gene microarrays. Using the Arabidopsis genes, we selected and designed 1,334 70-mer oligos from a subset of cotton fiber ESTs. Statistical analysis of the microarray data indicates that the number of significantly differentially expressed genes was 856 in the leaves compared to the ovules (3 days post-anthesis, DPA), 632 in the petals relative to the ovules (3 DPA), and 91 in the ovules at 0 DPA compared to 3 DPA, all in TM-1. Moreover, 117 and 30 genes were expressed significantly different in the ovules at three and 0 DPA, respectively, between TM-1 and N1N1. Quantitative RT-PCR analysis of 23 fiberassociated genes in seven tissues including ovules, fiber-bearing ovules, fibers, and non-fiber tissues in TM-1 and N1N1 indicates a mode of temporal regulation of the genes involved in transcriptional and translational regulation, signal transduction, and cell differentiation during early stages of fiber development. Suppression of the fiber-associated genes in the mutant may suggest that the N1N1 mutation disrupts temporal regulation of gene expression, leading to a defective process of fiber cell elongation and development.Cotton fiber development is a fundamental biological phenomenon, yet the molecular basis of fiber cell initiation is poorly understood. We examined molecular and cellular events of fiber cell development in the naked seed mutant (N1N1) and its isogenic line of cotton (Gossypium hirsutum L. cv. Texas Marker-1, TM-1). The dominant mutation not only delayed the process of fiber cell formation and elongation but also reduced the total number of fiber cells, resulting in sparsely distributed short fibers. Gene expression changes in TM-1 and N1N1 mutant lines among four tissues were analyzed using spotted cotton oligo-gene microarrays. Using the Arabidopsis genes, we selected and designed 1,334 70-mer oligos from a subset of cotton fiber ESTs. Statistical analysis of the microarray data indicates that the number of significantly differentially expressed genes was 856 in the leaves compared to the ovules (3 days post-anthesis, DPA), 632 in the petals relative to the ovules (3 DPA), and 91 in the ovules at 0 DPA compared to 3 DPA, all in TM-1. Moreover, 117 and 30 genes were expressed significantly different in the ovules at three and 0 DPA, respectively, between TM-1 and N1N1. Quantitative RT-PCR analysis of 23 fiberassociated genes in seven tissues including ovules, fiber-bearing ovules, fibers, and non-fiber tissues in TM-1 and N1N1 indicates a mode of temporal regulation of the genes involved in transcriptional and translational regulation, signal transduction, and cell differentiation during early stages of fiber development. Suppression of the fiber-associated genes in the mutant may suggest that the N1N1 mutation disrupts temporal regulation of gene expression, leading to a defective process of fiber cell elongation and development.	en_US
dc.description.sponsorship	Springer-Verlag	en_US
dc.description.uri	https://www.scimagojr.com/journalsearch.php?q=16646&tip=sid&clean=0
dc.language.iso	en	en_US
dc.publisher	Springer-Verlag	en_US
dc.relation.ispartofseries	Planta;Volume: 223 Issue: 3 Pages: 418-432
dc.subject	University of Cotton (Gossypium hirsutum L); Fiberless mutant; Fiber cell initiation; Microarray; Gene regulation; Arabidopsis	en_US
dc.title	Developmental and gene expression analyses of a cotton naked seed mutant	en_US
dc.type	Article	en_US
dc.identifier.doi	https://doi.org/10.1007/s00425-005-0098-7
dc.Affiliation	October University for modern sciences and Arts (MSA)